HL_6GQ1_101

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6GQ1|1|2|G|1243, 6GQ1|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_101 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3745

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6GQ1|1|2|A|1238
6GQ1|1|2|U|1239
6GQ1|1|2|U|1240
6GQ1|1|2|G|1241
6GQ1|1|2|A|1242
6GQ1|1|2|G|1243
6GQ1|1|2|A|1244
6GQ1|1|2|G|1245
6GQ1|1|2|C|1246
6GQ1|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S15

Chain AT

40S ribosomal protein S29-A

Chain AW

Ubiquitin-40S ribosomal protein S31