3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
6GQ1|1|2|U|1314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GQ1_103 not in the Motif Atlas
Homologous match to HL_4V88_215
Geometric discrepancy: 0.2319
The information below is about HL_4V88_215
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6GQ1|1|2|C|1309
6GQ1|1|2|U|1310
6GQ1|1|2|U|1311
6GQ1|1|2|A|1312
6GQ1|1|2|A|1313
6GQ1|1|2|U|1314
6GQ1|1|2|U|1315
6GQ1|1|2|G|1316

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AH
40S ribosomal protein S17-B

Coloring options:


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