HL_6GQ1_105
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GUUUCAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQ1_105 not in the Motif Atlas
- Geometric match to HL_8VTW_008
- Geometric discrepancy: 0.3592
- The information below is about HL_8VTW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84570.1
- Basepair signature
- cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6GQ1|1|2|G|1395
6GQ1|1|2|U|1396
6GQ1|1|2|U|1397
6GQ1|1|2|U|1398
6GQ1|1|2|C|1399
6GQ1|1|2|A|1400
6GQ1|1|2|A|1401
6GQ1|1|2|G|1402
6GQ1|1|2|C|1403
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AH
- 40S ribosomal protein S17-B
- Chain AS
- 40S ribosomal protein S28-A
- Chain AV
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain v
- 40S ribosomal protein S5
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