HL_6GQB_050
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCUAAUUAGU
- Length
- 11 nucleotides
- Bulged bases
- 6GQB|1|1|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_050 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3893
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GQB|1|1|A|2291
6GQB|1|1|U|2292
6GQB|1|1|C|2293
6GQB|1|1|U|2294
6GQB|1|1|A|2295
6GQB|1|1|A|2296
6GQB|1|1|U|2297
6GQB|1|1|U|2298
6GQB|1|1|A|2299
6GQB|1|1|G|2300
6GQB|1|1|U|2301
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- 60S ribosomal protein L23-A
- Chain n
- 60S ribosomal protein L41-B
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