HL_6GQB_074

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6GQB|1|2|U|75, 6GQB|1|2|U|77, 6GQB|1|2|A|78

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_074 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.3599

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6GQB|1|2|C|70
6GQB|1|2|A|71
6GQB|1|2|A|72
6GQB|1|2|U|73
6GQB|1|2|U|74
6GQB|1|2|U|75
6GQB|1|2|A|76
6GQB|1|2|U|77
6GQB|1|2|A|78
6GQB|1|2|C|79
6GQB|1|2|A|80
6GQB|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A