HL_6GQB_082
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6GQB|1|2|A|400, 6GQB|1|2|C|402, 6GQB|1|2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_082 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1667
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GQB|1|2|C|393
6GQB|1|2|C|394
6GQB|1|2|U|395
6GQB|1|2|G|396
6GQB|1|2|A|397
6GQB|1|2|G|398
6GQB|1|2|A|399
6GQB|1|2|A|400
6GQB|1|2|A|401
6GQB|1|2|C|402
6GQB|1|2|G|403
6GQB|1|2|G|404
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain u
- 40S ribosomal protein S4-A
- Chain w
- 40S ribosomal protein S6-A
- Chain y
- 40S ribosomal protein S8-A
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