HL_6GQB_085

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

6GQB|1|2|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_085 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5898

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GQB|1|2|C|491
6GQB|1|2|A|492
6GQB|1|2|U|493
6GQB|1|2|U|494
6GQB|1|2|C|495
6GQB|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains