HL_6GQB_092
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_092 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2131
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6GQB|1|2|A|900
6GQB|1|2|G|901
6GQB|1|2|G|902
6GQB|1|2|U|903
6GQB|1|2|G|904
6GQB|1|2|A|905
6GQB|1|2|A|906
6GQB|1|2|A|907
6GQB|1|2|U|908
6GQB|1|2|U|909
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- 40S ribosomal protein S14-B
- Chain AQ
- 40S ribosomal protein S26-B
- Chain AY
- Messenger RNA
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