HL_6GQB_099

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6GQB|1|2|A|1242, 6GQB|1|2|G|1243, 6GQB|1|2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQB_099 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.5748

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GQB|1|2|A|1238
6GQB|1|2|U|1239
6GQB|1|2|U|1240
6GQB|1|2|G|1241
6GQB|1|2|A|1242
6GQB|1|2|G|1243
6GQB|1|2|A|1244
6GQB|1|2|G|1245
6GQB|1|2|C|1246
6GQB|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S15

Chain AT

40S ribosomal protein S29-A

Chain AW

Ubiquitin-40S ribosomal protein S31