HL_6GQB_116
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQB_116 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.1622
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6GQB|1|AX|A|31
6GQB|1|AX|C|32
6GQB|1|AX|U|33
6GQB|1|AX|G|34
6GQB|1|AX|A|35
6GQB|1|AX|A|36
6GQB|1|AX|G|37
6GQB|1|AX|A|38
6GQB|1|AX|U|39
Current chains
- Chain AX
- Transfer RNA - Phe
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 40S ribosomal protein S16-A
- Chain AY
- Messenger RNA
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