HL_6GQV_064

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6GQV|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_064 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.2835

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GQV|1|1|A|2897
6GQV|1|1|G|2898
6GQV|1|1|C|2899
6GQV|1|1|A|2900
6GQV|1|1|G|2901
6GQV|1|1|A|2902
6GQV|1|1|A|2903
6GQV|1|1|U|2904

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AX

Elongation factor 2

Chain H

60S ribosomal protein L9-A

Chain m

Ubiquitin-60S ribosomal protein L40