HL_8C3A_063

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases (A, C, G, U)

2870G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.2

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8C3A|1|1|A|2869
8C3A|1|1|G|2870
8C3A|1|1|C|2871
8C3A|1|1|A|2872
8C3A|1|1|G|2873
8C3A|1|1|A|2874
8C3A|1|1|A|2875
8C3A|1|1|U|2876

Current chains

Chain 1

25S

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B