HL_6GQV_079

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6GQV|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_079 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2542

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GQV|1|2|G|243
6GQV|1|2|A|244
6GQV|1|2|U|245
6GQV|1|2|G|246
6GQV|1|2|A|247
6GQV|1|2|U|248
6GQV|1|2|U|249
6GQV|1|2|C|250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A