HL_6GQV_092

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6GQV|1|2|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_092 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4766

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GQV|1|2|A|829
6GQV|1|2|U|830
6GQV|1|2|U|831
6GQV|1|2|U|832
6GQV|1|2|U|833
6GQV|1|2|G|834
6GQV|1|2|U|835
6GQV|1|2|U|836
6GQV|1|2|G|837
6GQV|1|2|G|838
6GQV|1|2|U|839
6GQV|1|2|U|840
6GQV|1|2|U|841
6GQV|1|2|C|842
6GQV|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A