HL_6GSJ_155

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

6GSJ|1|1H|U|747, 6GSJ|1|1H|A|751, 6GSJ|1|1H|A|752

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_155 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0445

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

6GSJ|1|1H|G|744
6GSJ|1|1H|G|745
6GSJ|1|1H|A|746
6GSJ|1|1H|U|747
6GSJ|1|1H|G|748
6GSJ|1|1H|C|749
6GSJ|1|1H|A|750
6GSJ|1|1H|A|751
6GSJ|1|1H|A|752
6GSJ|1|1H|C|753

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32

Chain P8

50S ribosomal protein L34