HL_6GSK_065

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_065 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.0801

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6GSK|1|14|C|1363
6GSK|1|14|G|1364
6GSK|1|14|A|1365
6GSK|1|14|A|1366
6GSK|1|14|A|1367
6GSK|1|14|G|1368

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain F5

50S ribosomal protein L28

Chain L5

50S ribosomal protein L34