HL_6GSL_006

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6GSL|1|13|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1236

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GSL|1|13|G|259
6GSL|1|13|G|260
6GSL|1|13|U|261
6GSL|1|13|A|262
6GSL|1|13|A|263
6GSL|1|13|U|264
6GSL|1|13|G|265
6GSL|1|13|G|266
6GSL|1|13|C|267

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20