HL_6GSM_009

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6GSM|1|2|U|248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_009 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2304

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GSM|1|2|G|242
6GSM|1|2|A|243
6GSM|1|2|U|244
6GSM|1|2|G|245
6GSM|1|2|A|246
6GSM|1|2|U|247
6GSM|1|2|U|248
6GSM|1|2|C|249

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain L

KLLA0A10483p