HL_6GSM_033

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6GSM|1|2|U|1313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_033 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3272

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GSM|1|2|C|1308
6GSM|1|2|U|1309
6GSM|1|2|U|1310
6GSM|1|2|A|1311
6GSM|1|2|A|1312
6GSM|1|2|U|1313
6GSM|1|2|U|1314
6GSM|1|2|G|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain R

KLLA0B01474p