HL_6GSN_009

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6GSN|1|2|U|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_009 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2197

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6GSN|1|2|G|242
6GSN|1|2|A|243
6GSN|1|2|U|244
6GSN|1|2|G|245
6GSN|1|2|A|246
6GSN|1|2|U|247
6GSN|1|2|U|248
6GSN|1|2|C|249

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain L

KLLA0A10483p