HL_6GSN_011

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6GSN|1|2|G|336

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_011 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1254

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6GSN|1|2|G|329
6GSN|1|2|A|330
6GSN|1|2|U|331
6GSN|1|2|A|332
6GSN|1|2|G|333
6GSN|1|2|U|334
6GSN|1|2|G|335
6GSN|1|2|G|336
6GSN|1|2|C|337

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p