HL_6GSN_023

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6GSN|1|2|U|832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSN_023 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.202

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GSN|1|2|A|828
6GSN|1|2|U|829
6GSN|1|2|U|830
6GSN|1|2|U|831
6GSN|1|2|U|832
6GSN|1|2|G|833
6GSN|1|2|U|834
6GSN|1|2|U|835
6GSN|1|2|G|836
6GSN|1|2|G|837
6GSN|1|2|U|838
6GSN|1|2|U|839
6GSN|1|2|U|840
6GSN|1|2|C|841
6GSN|1|2|U|842

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain L

KLLA0A10483p