HL_6GSN_030
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6GSN|1|2|A|1195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSN_030 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.3801
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GSN|1|2|G|1187
6GSN|1|2|A|1188
6GSN|1|2|C|1189
6GSN|1|2|U|1190
6GSN|1|2|C|1191
6GSN|1|2|A|1192
6GSN|1|2|A|1193
6GSN|1|2|C|1194
6GSN|1|2|A|1195
6GSN|1|2|C|1196
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- 40S ribosomal protein S16
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain i
- Eukaryotic translation initiation factor 1A
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