HL_6GXM_010
3D structure
- PDB id
- 6GXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 6GXM|1|A|G|329, 6GXM|1|A|A|330, 6GXM|1|A|C|331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GXM_010 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1794
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6GXM|1|A|G|327
6GXM|1|A|U|328
6GXM|1|A|G|329
6GXM|1|A|A|330
6GXM|1|A|C|331
6GXM|1|A|A|332
6GXM|1|A|G|333
6GXM|1|A|C|334
6GXM|1|A|C|335
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L24
Coloring options: