HL_6GXM_072

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXM_072 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3609

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6GXM|1|a|U|157
6GXM|1|a|G|158
6GXM|1|a|G|159
6GXM|1|a|A|160
6GXM|1|a|A|161
6GXM|1|a|A|162
6GXM|1|a|C|163
6GXM|1|a|G|164

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain t

30S ribosomal protein S20