HL_6GXN_039

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

6GXN|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXN_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3174

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GXN|1|A|U|1629
6GXN|1|A|A|1630
6GXN|1|A|G|1631
6GXN|1|A|A|1632
6GXN|1|A|G|1633
6GXN|1|A|A|1634
6GXN|1|A|A|1635
6GXN|1|A|U|1636
6GXN|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains