3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
6GXN|1|A|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GXN_047 not in the Motif Atlas
Homologous match to HL_5J7L_182
Geometric discrepancy: 0.163
The information below is about HL_5J7L_182
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6GXN|1|A|G|1949
6GXN|1|A|G|1950
6GXN|1|A|U|1951
6GXN|1|A|A|1952
6GXN|1|A|A|1953
6GXN|1|A|G|1954
6GXN|1|A|U|1955
6GXN|1|A|U|1956
6GXN|1|A|C|1957

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain v
Peptide chain release factor RF1

Coloring options:


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