3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
6GXN|1|A|A|2268, 6GXN|1|A|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GXN_052 not in the Motif Atlas
Homologous match to HL_5J7L_187
Geometric discrepancy: 0.1607
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6GXN|1|A|C|2264
6GXN|1|A|U|2265
6GXN|1|A|A|2266
6GXN|1|A|A|2267
6GXN|1|A|A|2268
6GXN|1|A|G|2269
6GXN|1|A|A|2270
6GXN|1|A|G|2271
6GXN|1|A|U|2272
6GXN|1|A|A|2273
6GXN|1|A|A|2274
6GXN|1|A|C|2275
6GXN|1|A|G|2276

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain x
Transfer RNA; tRNA

Coloring options:


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