HL_6GXN_102

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

6GXN|1|x|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXN_102 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.1381

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6GXN|1|x|G|32
6GXN|1|x|C|33
6GXN|1|x|U|34
6GXN|1|x|C|35
6GXN|1|x|A|36
6GXN|1|x|U|37
6GXN|1|x|A|38
6GXN|1|x|A|39
6GXN|1|x|C|40

Current chains

Chain x

fMet-tRNA

Nearby chains

Chain 7

mRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain i

30S ribosomal protein S9

Chain v

Peptide chain release factor RF1