HL_6GXP_026

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

6GXP|1|A|U|958, 6GXP|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_026 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3092

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6GXP|1|A|G|954
6GXP|1|A|U|955
6GXP|1|A|G|956
6GXP|1|A|C|957
6GXP|1|A|U|958
6GXP|1|A|A|959
6GXP|1|A|A|960
6GXP|1|A|C|961
6GXP|1|A|G|962
6GXP|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16