HL_6GXP_112

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6GXP|1|A|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GXP_112 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2132

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GXP|1|A|A|382
6GXP|1|A|C|383
6GXP|1|A|A|384
6GXP|1|A|C|385
6GXP|1|A|G|386
6GXP|1|A|U|387
6GXP|1|A|G|388
6GXP|1|A|G|389
6GXP|1|A|U|390
6GXP|1|A|A|391
6GXP|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28