HL_6GZ3_099

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6GZ3|1|B1|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ3_099 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.391

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GZ3|1|B1|U|885
6GZ3|1|B1|A|886
6GZ3|1|B1|U|887
6GZ3|1|B1|U|888
6GZ3|1|B1|U|889
6GZ3|1|B1|U|890
6GZ3|1|B1|G|891
6GZ3|1|B1|U|892
6GZ3|1|B1|U|893
6GZ3|1|B1|G|894
6GZ3|1|B1|G|895
6GZ3|1|B1|U|896
6GZ3|1|B1|U|897
6GZ3|1|B1|U|898
6GZ3|1|B1|U|899
6GZ3|1|B1|C|900
6GZ3|1|B1|G|901

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

ribosomal protein eS8

Chain BL

Ribosomal protein S11