HL_6GZ4_024

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6GZ4|1|A2|C|1658, 6GZ4|1|A2|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1262

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6GZ4|1|A2|C|1657
6GZ4|1|A2|C|1658
6GZ4|1|A2|U|1659
6GZ4|1|A2|C|1660
6GZ4|1|A2|A|1661
6GZ4|1|A2|G|1662

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Aa

ribosomal protein uL15

Chain Ab

ribosomal protein eL29

Chain Ao

ribosomal protein eL42