HL_6GZ4_041

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_041 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5628

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GZ4|1|A2|G|2643
6GZ4|1|A2|U|2644
6GZ4|1|A2|U|2645
6GZ4|1|A2|C|2646
6GZ4|1|A2|G|2647
6GZ4|1|A2|C|2648
6GZ4|1|A2|C|2649

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain Ap

ribosomal protein eL43