HL_6GZ4_046

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GZ4|1|A2|U|2853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_046 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1094

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GZ4|1|A2|C|2851
6GZ4|1|A2|U|2852
6GZ4|1|A2|U|2853
6GZ4|1|A2|C|2854
6GZ4|1|A2|G|2855
6GZ4|1|A2|G|2856

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

ribosomal protein eL41

Chain Ap

ribosomal protein eL43

Chain B1

Small subunit ribosomal RNA; SSU rRNA