HL_6GZ4_051

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6GZ4|1|A2|A|3731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_051 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2096

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ4|1|A2|G|3728
6GZ4|1|A2|U|3729
6GZ4|1|A2|A|3730
6GZ4|1|A2|A|3731
6GZ4|1|A2|C|3732
6GZ4|1|A2|U|3733
6GZ4|1|A2|A|3734
6GZ4|1|A2|U|3735
6GZ4|1|A2|G|3736
6GZ4|1|A2|A|3737
6GZ4|1|A2|C|3738

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA

Chain Ct

eukaryotic elongation factor 2 (eEF2)