HL_6GZ4_081

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6GZ4|1|B1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_081 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.5377

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZ4|1|B1|G|156
6GZ4|1|B1|U|157
6GZ4|1|B1|A|158
6GZ4|1|B1|A|159
6GZ4|1|B1|U|160
6GZ4|1|B1|U|161
6GZ4|1|B1|C|162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

ribosomal protein eS6

Chain BY

ribosomal protein eS24