HL_6GZ4_087

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

6GZ4|1|B1|C|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_087 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1241

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GZ4|1|B1|U|416
6GZ4|1|B1|C|417
6GZ4|1|B1|A|418
6GZ4|1|B1|G|419
6GZ4|1|B1|G|420
6GZ4|1|B1|G|421

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein eS28

Chain BJ

ribosomal protein uS4

Chain BL

ribosomal protein uS17

Chain BW

ribosomal protein uS8

Chain BX

ribosomal protein uS12