HL_6GZ4_090

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6GZ4|1|B1|A|500, 6GZ4|1|B1|C|502, 6GZ4|1|B1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_090 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5752

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ4|1|B1|C|498
6GZ4|1|B1|G|499
6GZ4|1|B1|A|500
6GZ4|1|B1|C|501
6GZ4|1|B1|C|502
6GZ4|1|B1|C|503
6GZ4|1|B1|G|504

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BY

ribosomal protein eS24