HL_6GZ4_119

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6GZ4|1|Bw|U|17, 6GZ4|1|Bw|G|19, 6GZ4|1|Bw|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ4_119 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1667

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|Bw|C|13
6GZ4|1|Bw|A|14
6GZ4|1|Bw|G|15
6GZ4|1|Bw|U|16
6GZ4|1|Bw|U|17
6GZ4|1|Bw|G|18
6GZ4|1|Bw|G|19
6GZ4|1|Bw|G|20
6GZ4|1|Bw|A|21
6GZ4|1|Bw|G|22

Current chains

Chain Bw

pe/E-site-tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BO

ribosomal protein uS11