HL_6GZ4_123
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ4_123 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.183
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GZ4|1|A4|A|32
6GZ4|1|A4|U|33
6GZ4|1|A4|C|34
6GZ4|1|A4|U|35
6GZ4|1|A4|C|36
6GZ4|1|A4|G|37
6GZ4|1|A4|U|38
6GZ4|1|A4|C|39
6GZ4|1|A4|U|40
6GZ4|1|A4|G|41
6GZ4|1|A4|A|42
6GZ4|1|A4|U|43
6GZ4|1|A4|C|44
6GZ4|1|A4|U|45
Current chains
- Chain A4
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- ribosomal protein uL18
- Chain AJ
- ribosomal protein uL5
Coloring options: