HL_6GZ5_020

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6GZ5|1|A2|C|1463, 6GZ5|1|A2|G|1464, 6GZ5|1|A2|C|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_020 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2468

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZ5|1|A2|G|1461
6GZ5|1|A2|C|1462
6GZ5|1|A2|C|1463
6GZ5|1|A2|G|1464
6GZ5|1|A2|C|1465
6GZ5|1|A2|G|1466
6GZ5|1|A2|C|1467
6GZ5|1|A2|C|1468

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain Ai

ribosomal protein eL36