HL_6GZ5_029

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6GZ5|1|A2|U|1961, 6GZ5|1|A2|A|1965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_029 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4944

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6GZ5|1|A2|C|1959
6GZ5|1|A2|A|1960
6GZ5|1|A2|U|1961
6GZ5|1|A2|G|1962
6GZ5|1|A2|G|1963
6GZ5|1|A2|A|1964
6GZ5|1|A2|A|1965
6GZ5|1|A2|G|1966
6GZ5|1|A2|U|1967
6GZ5|1|A2|C|1968
6GZ5|1|A2|G|1969

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Aq

ribosomal protein uL11

Chain Ct

eukaryotic elongation factor 2 (eEF2)