HL_6GZ5_030
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_030 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.2649
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6GZ5|1|A2|U|1987
6GZ5|1|A2|G|1988
6GZ5|1|A2|U|1989
6GZ5|1|A2|A|1990
6GZ5|1|A2|A|1991
6GZ5|1|A2|C|1992
6GZ5|1|A2|A|1993
6GZ5|1|A2|A|1994
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AK
- ribosomal protein uL10
- Chain Am
- ribosomal protein eL40
- Chain Aq
- ribosomal protein uL11
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: