HL_6GZ5_049

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6GZ5|1|A2|A|3613, 6GZ5|1|A2|A|3614, 6GZ5|1|A2|U|3615, 6GZ5|1|A2|A|3619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_049 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1958

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6GZ5|1|A2|U|3610
6GZ5|1|A2|U|3611
6GZ5|1|A2|U|3612
6GZ5|1|A2|A|3613
6GZ5|1|A2|A|3614
6GZ5|1|A2|U|3615
6GZ5|1|A2|U|3616
6GZ5|1|A2|A|3617
6GZ5|1|A2|A|3618
6GZ5|1|A2|A|3619
6GZ5|1|A2|A|3620

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain Aj

ribosomal protein eL37