HL_6GZ5_052

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6GZ5|1|A2|A|3731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_052 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.265

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ5|1|A2|G|3728
6GZ5|1|A2|U|3729
6GZ5|1|A2|A|3730
6GZ5|1|A2|A|3731
6GZ5|1|A2|C|3732
6GZ5|1|A2|U|3733
6GZ5|1|A2|A|3734
6GZ5|1|A2|U|3735
6GZ5|1|A2|G|3736
6GZ5|1|A2|A|3737
6GZ5|1|A2|C|3738

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA

Chain Ct

eukaryotic elongation factor 2 (eEF2)