HL_6GZ5_053

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6GZ5|1|A2|U|3773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1151

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6GZ5|1|A2|U|3767
6GZ5|1|A2|C|3768
6GZ5|1|A2|U|3769
6GZ5|1|A2|A|3770
6GZ5|1|A2|A|3771
6GZ5|1|A2|U|3772
6GZ5|1|A2|U|3773
6GZ5|1|A2|A|3774
6GZ5|1|A2|G|3775

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AV

ribosomal protein uL14

Chain B1

Small subunit ribosomal RNA; SSU rRNA