HL_6GZ5_058

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6GZ5|1|A2|A|4176, 6GZ5|1|A2|C|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1385

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6GZ5|1|A2|U|4172
6GZ5|1|A2|C|4173
6GZ5|1|A2|A|4174
6GZ5|1|A2|A|4175
6GZ5|1|A2|A|4176
6GZ5|1|A2|C|4177
6GZ5|1|A2|G|4178
6GZ5|1|A2|G|4179
6GZ5|1|A2|U|4180
6GZ5|1|A2|A|4181
6GZ5|1|A2|A|4182
6GZ5|1|A2|C|4183
6GZ5|1|A2|G|4184

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

ribosomal protein uL16

Chain AT

ribosomal protein eL21

Chain Ab

ribosomal protein eL29