HL_6GZ5_099
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 6GZ5|1|B1|U|890
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_099 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3515
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6GZ5|1|B1|U|885
6GZ5|1|B1|A|886
6GZ5|1|B1|U|887
6GZ5|1|B1|U|888
6GZ5|1|B1|U|889
6GZ5|1|B1|U|890
6GZ5|1|B1|G|891
6GZ5|1|B1|U|892
6GZ5|1|B1|U|893
6GZ5|1|B1|G|894
6GZ5|1|B1|G|895
6GZ5|1|B1|U|896
6GZ5|1|B1|U|897
6GZ5|1|B1|U|898
6GZ5|1|B1|U|899
6GZ5|1|B1|C|900
6GZ5|1|B1|G|901
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BG
- ribosomal protein eS6
- Chain BI
- ribosomal protein eS8
- Chain BL
- ribosomal protein uS17
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