HL_6GZK_015

3D structure

PDB id

6GZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZK_015 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.1765

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZK|8|A|C|13
6GZK|8|A|G|14
6GZK|8|A|A|15
6GZK|8|A|A|16
6GZK|8|A|A|17
6GZK|8|A|G|18

Current chains

Chain A

TMR3 (48-MER)

Nearby chains